Orientation¶
#include <pbbam/Orientation.h>
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enum
PacBio::BAM::
Orientation
¶ This enum defines the orientations recognized by BamRecord, for presenting “per-base” data.
Orientation::NATIVE indicates that data should be presented in the subread’s original form.
Orientation::GENOMIC indicates that data should be presented relative to genomic forward strand. This means that data will be reversed (or reverse-complemented) if the subread was aligned to the reverse strand.
Values:
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NATIVE
¶ Present data in ‘raw’ original orientation, regardless of aligned Strand.
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GENOMIC
¶ Present data in aligned orientation, always relative to Strand::FORWARD.
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