Orientation

#include <pbbam/Orientation.h>
enum PacBio::BAM::Orientation

This enum defines the orientations recognized by BamRecord, for presenting “per-base” data.

Orientation::NATIVE indicates that data should be presented in the subread’s original form.

Orientation::GENOMIC indicates that data should be presented relative to genomic forward strand. This means that data will be reversed (or reverse-complemented) if the subread was aligned to the reverse strand.

Values:

NATIVE

Present data in ‘raw’ original orientation, regardless of aligned Strand.

GENOMIC

Present data in aligned orientation, always relative to Strand::FORWARD.