ReferenceLookupData¶
#include <pbbam/PbiLookupData.h>
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class
PacBio::BAM::ReferenceLookupData¶ The ReferenceLookupData class provides quick lookup access to the “CoordinateSortedData” section of the PBI index.
Constructors & Related Methods
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ReferenceLookupData()¶ Creates an empty lookup data object.
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ReferenceLookupData(const PbiRawReferenceData &rawData)¶ Creates a lookup data object from the corresponding raw data.
- Parameters
rawData: raw data loaded from a PBI file
Lookup Data Methods
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IndexRange
Indices(const int32_t tId) const¶ Retrieves the index range for all records that map to a particular reference.
Client code, such as custom filters, should use this when possible, only touching the raw fields for more complex operations (e.g. when unpacking is necessary).
- Return
- resulting index range [begin, end). If
tIdis unknown, will return IndexRange(-1,-1) . - Parameters
tId: reference ID to lookup
Lookup Data Members
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std::unordered_map<int32_t, IndexRange>
references_¶
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