Usage: pbmerge [options] [-o <out.bam>] <INPUT>
pbmerge merges PacBio BAM files. If the input is DataSetXML, any filters will be
applied. If no output filename is specified, new BAM will be written to stdout.
Options:
-h, --help show this help message and exit
--version show program's version number and exit
Input/Output:
-o output Output BAM filename.
--no-pbi Set this option to skip PBI index file creation. PBI
creation is automatically skipped if no output filename
is provided.
INPUT Input may be one of:
DataSetXML, list of BAM files, or FOFN
fofn: pbmerge -o merged.bam bams.fofn
bams: pbmerge -o merged.bam 1.bam 2.bam 3.bam
xml: pbmerge -o merged.bam foo.subreadset.xml