.. pbbam documentation master file, created by sphinx-quickstart on Fri Dec 4 10:08:52 2015. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. .. _home: pbbam documentation =================== As of the 3.0 release of SMRTanalysis, PacBio is embracing the industry standard BAM format for (both aligned and unaligned) basecall data files. We have also formulated a BAM companion file format (bam.pbi) enabling fast access to a richer set of per-read information as well as compatibility for software built around the legacy cmp.h5 format. The **pbbam** software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities. .. toctree:: :maxdepth: 1 getting_started api_reference swig_bindings commandline_utilities Search: * :ref:`genindex` * :ref:`search`