#include <pbbam/Conifig.h>

Defines library-wide macros & global variables.

Library Import/Export

namespace PacBio
namespace BAM

Verbosity Settings

int HtslibVerbosity

Sets the desired verbosity level of htslib warnings.

Change this value to allow debug/warning statements from htslib itself. The valid range seems to be [0-3], where 0 indicates OFF, and 3 is the most verbose.

By default, pbbam disables htslib statements to keep output channels clean. We rely on exceptions & their associated messages instead.

This global variable is obviously not thread-safe by any means. But as a debug flag, it is unlikely to cause any real issues. The worst case would be unexpected presence/absence of output statements.