Config¶
#include <pbbam/Conifig.h>
Defines library-wide macros & global variables.
Library Import/Export
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PBBAM_EXPORT
¶
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namespace
PacBio
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namespace
BAM
¶ Verbosity Settings
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int
HtslibVerbosity
¶ Sets the desired verbosity level of htslib warnings.
Change this value to allow debug/warning statements from htslib itself. The valid range seems to be [0-3], where 0 indicates OFF, and 3 is the most verbose.
By default, pbbam disables htslib statements to keep output channels clean. We rely on exceptions & their associated messages instead.
This global variable is obviously not thread-safe by any means. But as a debug flag, it is unlikely to cause any real issues. The worst case would be unexpected presence/absence of output statements.
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int
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namespace