C++ API ReferenceΒΆ
Watch this space for more recipes & how-tos.
- Accuracy
- AlignmentPrinter
- AlignmentSet
- BaiIndexedBamReader
- BamFile
- BamHeader
- BamReader
- BamRecord
- BamRecordBuilder
- BamRecordImpl
- BamRecordView
- BamTagCodec
- BamWriter
- BarcodeLookupData
- BarcodeQuery
- BarcodeSet
- BasicLookupData
- Cigar
- CigarOperation
- Compare
- Config
- ConsensusAlignmentSet
- ConsensusReadSet
- ContigSet
- DataSet
- DataSetBase
- DataSetMetadata
- EntireFileQuery
- ExtensionElement
- Extensions
- ExternalResource
- ExternalResources
- FileIndex
- FileIndices
- Filter
- Filters
- Frames
- GenomicInterval
- GenomicIntervalCompositeBamReader
- GenomicIntervalQuery
- HdfSubreadSet
- IndexResultBlock
- IndexedFastaReader
- Interval
- InvalidSequencingChemistryException
- LocalContextFlags
- MappedLookupData
- NamespaceInfo
- NamespaceRegistry
- OrderedLookup
- Orientation
- ParentTool
- PbiBuilder
- PbiFile
- PbiFilter
- PbiFilterCompositeBamReader
- PbiFilterQuery
- PbiFilterTypes
- PbiIndex
- PbiIndexedBamReader
- PbiRawBarcodeData
- PbiRawBasicData
- PbiRawData
- PbiRawMappedData
- PbiRawReferenceData
- PbiReferenceEntry
- Position
- ProgramInfo
- QNameQuery
- QualityValue
- QualityValues
- ReadAccuracyQuery
- ReadGroupInfo
- ReferenceLookupData
- ReferenceSet
- SamTagCodec
- SequenceInfo
- SequentialCompositeBamReader
- Strand
- SubDataSets
- SubreadLengthQuery
- SubreadSet
- Tag
- TagCollection
- UnorderedLookup
- VirtualPolymeraseBamRecord
- VirtualPolymeraseCompositeReader
- VirtualPolymeraseReader
- VirtualRegion
- VirtualRegionType
- VirtualRegionTypeMap
- ZmwGroupQuery
- ZmwQuery
- ZmwWhitelistVirtualReader