PbiRawBasicData¶

#include <pbbam/PbiRawData.h>

class PacBio::BAM::PbiRawBasicData¶

The PbiRawBasicData class represents the raw data stored in the “BasicData” section of the PBI index.

Constructors & Related Methods

PbiRawBasicData()¶: Creates an empty data structure.

PbiRawBasicData(uint32_t numReads)¶: Creates an empty data structure, preallocating space for a known number of records.

PbiRawBasicData(const PbiRawBasicData &other)¶

PbiRawBasicData(PbiRawBasicData &&other)¶

PbiRawBasicData &operator=(const PbiRawBasicData &other)¶

PbiRawBasicData &operator=(PbiRawBasicData &&other)¶

Index Construction

void AddRecord(const BamRecord &b, int64_t offset)¶

Adds a record’s mapping data.

Parameters

b: BAM record
offset: virtual file offset where record begins

Raw Data Containers

std::vector<int32_t> rgId_¶

std::vector<int32_t> qStart_¶

std::vector<int32_t> qEnd_¶

std::vector<int32_t> holeNumber_¶

std::vector<float> readQual_¶

std::vector<uint8_t> ctxtFlag_¶

std::vector<int64_t> fileOffset_¶

std::vector<uint16_t> fileNumber_¶