LocalContextFlags¶
#include <pbbam/LocalContextFlags.h>
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enum
PacBio::BAM::
LocalContextFlags
¶ The LocalContextFlags enum defines the flags that can be used to describe a subread’s “local context”, i.e. whether it is flanked by barcodes/adapters or its pass orientation.
Values:
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NO_LOCAL_CONTEXT
= 0¶ No context information available.
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ADAPTER_BEFORE
= 1¶ Adapter precedes subread.
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ADAPTER_AFTER
= 2¶ Adapter follows subread.
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BARCODE_BEFORE
= 4¶ Barcode precedes subread.
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BARCODE_AFTER
= 8¶ Barcode follows subread.
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FORWARD_PASS
= 16¶ Subread’s orientation is ‘forward pass’.
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REVERSE_PASS
= 32¶ Subread’s orientation is ‘reverse pass’.
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