LocalContextFlags

#include <pbbam/LocalContextFlags.h>

enum PacBio::BAM::LocalContextFlags

The LocalContextFlags enum defines the flags that can be used to describe a subread’s “local context”, i.e. whether it is flanked by barcodes/adapters or its pass orientation.

Values:

NO_LOCAL_CONTEXT = 0

No context information available.

ADAPTER_BEFORE = 1

Adapter precedes subread.

ADAPTER_AFTER = 2

Adapter follows subread.

BARCODE_BEFORE = 4

Barcode precedes subread.

BARCODE_AFTER = 8

Barcode follows subread.

FORWARD_PASS = 16

Subread’s orientation is ‘forward pass’.

REVERSE_PASS = 32

Subread’s orientation is ‘reverse pass’.